260. Kinetic Consequences of Covalent Linkage of DNA Binding Polyamides, R. Baliga, E. E.Baird, D. M. Herman, C. Melander, P. B. Dervan and D. M. Crothers, Biochemistry 40, 3-8(2001).
258. Global Structure and Mechanical Properties of a 10-bp Nucleosome Positioning Motif, M.Roychoudhury, A. Sitlani, J. Lapham and D. M. Crothers, Proc. Natl. Acad. Sci. U.S.A. 97,13608-13613 (2000).
257. RNA Folding Pathways, D. M. Crothers, Curr. Protocols in Nucleic Acid Chem.11.1.1-11.1.5 (2000)
256. The Kinetic Basis for Sequence Discrimination by Distamycin A, R. Baliga and D. M.Crothers, J. Am. Chem. Soc. 122, 11751-11752 (2000)
255. On the Kinetics of Distamycin Binding to its Target Sites on Duplex DNA, R. Baliga andD. M. Crothers, Proc. Natl. Acad. Sci. U.S.A. 97, 7814-7818 (2000).
254. Site-Specific Cleavage of Transcript RNA, J. Lapham and D. M. Crothers, Methods inEnzymology 317, 132-139 (2000).
252. Interaction of Calicheamicin g1I and its Related Carbohydrates with DNA-Protein Complexes. C. Sissi, J. Aiyar, S. Boyer, K. Depew, S. Danishefsky and D. M. Crothers, Proc. Natl. Acad. Sci. U.S.A., 9 96, 10643-10648 (1999).
251. Characterization of the Solution Conformation of Unbound and Tat Peptide-Bound Forms of HIV-1 TAR RNA, K. S. Long and D. M. Crothers, Biochemistry, 38, 10059-10069 (1999).
250. Decreased Imino Proton Exchange and Base-pair Opening in the IHF-DNA Complex Measured by NMR, G. M. Dhavan, J. Lapham, S. Yang and D. M. Crothers, J. Mol. Biol., 288, 659-671 (1999).
248. An In Vitro Transcription Assay for Probing Drug-DNA Interactions at Individual Drug Sites, D. R. Phillips, C. M. Cullinane and D. M. Crothers, Molecular Biotechnology 10, 63-75 (1998).
247. Characterization of Covalent Adriamycin-DNA Adducts, S. M. Zeman D. R. Phillips and D. M. Crothers, Proc. Natl. Acad. Sci. U.S.A., 95, 11561-11565 (1998).
246. The Solution Structure of and RNA Loop-Loop Complex: The ColE1 Inverted Loop Sequence, A. J. Lee and D. M. Crothers, Structure 6, 993-1005 (1998).
245. Simultaneous Determination of Helical Unwinding Angles and Intrinsic Association Constants in Ligand-DNA Complexes: The Interaction between DNA and Calichearubicin B, S. M. Zeman, K. M. Depew, S. J. Danishefsky and D. M. Crothers, Proc. Natl. Acad. Sci. U.S.A. 95, 4327-4332 (1998).
244. Measurement of the DNA Bend Angle Induced by the Catabolite Activator Protein Using Monte Carlo Simulation of Cyclization Kinetics, J.D. Kahn and D.M. Crothers, J. Mol. Biol., 276 (1998)
243. Characterization of the ATF/CREB Site and Its Complex with GNC4, S.C. Hockings, J.D. Kahn, and D.M. Crothers, Proc. Natl. Acad. Sci. U.S.A. 95, 1410-1415 (1998)
242. DNA-Binding Domains of Fos and Jun Do Not Induce DNA Curvature: An Investigation with Solution and Gel Methods, A. Sitlani and D.M. Crothers, Proc. Natl. Acad. Sci. U.S.A. 95, 1404-1409 (1998)
240. The Position of Site-Directed Cleavage of RNA using RNase H and 2'-O methyl Oligonucleotides is Dependent on the Enzyme Source, J. Lapham, Y.-T. Yu, M.-D. Shu, J.A. Steitz, and D.M. Crothers, RNA 3, 950-951 (1997)
239. Identification and Characterization of Genomic Nucleosome-positioning Sequences, H.R. Widlund, H. Cao, S. Simonsson, E. Magnusson, T. Simonsson, P.E. Nielsen, J.D. Kahn, D.M. Crothers, M. Kubista, J. Mol. Biol. 267, 807-818 (1997)
237. Kinetic Discrimination in the Folding of Intramolecular Triple Helicies, R. W. Roberts and D. M. Crothers, J. Mol. Biol., 260, 135-146 (1996)
236. Prediction of Stability of DNA Triplexes, R. W. Roberts and D. M. Crothers, Proc. Natl. Acad. Sci, 93, 4325-4329 (1996)
235. RNase H Cleavage for Processing of in vitro Transcribed RNA for NMR Studies and RNA Ligation, J. Lapham and D. M. Crothers, RNA2, 289-296 (1996).
234. Fos and Jun Do Not Bend the AP-1 Recognition Site, A. Sitlani and D. M. Crothers, Proc. Natl. Acad. Sci. U.S.A. 93, 3248-3252 (1996).
233. Determining RNA Solution Structure by Segmental Isotopic Labeling and NMR:Applications to Caenorhabditis elegans Spliced Leader RNA 1, J. Xu, J. Lapham and D. M. Crothers, Proc. Natl. Acad. Sci. U.S.A. 93, 44-48 (1996).
231. Interaction of Human Immunodeficiency Virus Type 1 Tat-Derived Peptides with TAR RNA, K. S. Long and D. M. Crothers, Biochemistry 34, 8885-8895 (1995).
230. Bent Helix Formation Between RNA Hairpins with Complementary Loops, J. P. Marino, R. S. Gregorian, G. Csankovszki and D. M. Crothers, Science 268, 1448-1454 (1995).
229. Determinants of RNA Hairpin Loop-Loop Complex Stability, R. S. Gregorian and D. M. Crothers, J. Mol. Biol. 248, 968-984 (1995).
228. NMR of Enzymatically Synthesized Uniformly 13C15N-labeled DNA Oligonucleotides, D. P. Zimmer and D. M. Crothers, Proc. Natl. Acad. Sci. U.S.A. 92 3091-3095 (1995).
227. Sequential Correlation of Anomeric Ribose Protons and Intervening Phosphorous in RNA Oligonucleotides by a 1H,13C,31P Triple Resonance Experiment: HCP-CCH-TOCSY, J. P. Marino, H. Schwalbe, C. Anklin, W. Bermel, D. M. Crothers, and C. Griesinger, J. Biomolecular NMR 5, 87-92 (1995).
226. An In Vitro Transcription Assay for Probing Drug-DNA Interactions During Active Transcription of DNA, D. R. Phillips and D. M. Crothers, Methods in Molecular Biol. 37, 89-105 (1995).
224. Sequence Elements Responsible for DNA Curvature. T. E. Haran, J. D. Kahn and D. M. Crothers, J. Mol. Biol. 244, 135-144 (1994).
223. Inhibition of Topoisomerase I by Anthracycline Antibiotics: Evidence for General Inhibition of Topoisomerase I by DNA-Binding Agents. R. T. Crow and D. M. Crothers, J. Med. Chem. 37, 3191-3194 (1994).
222. On the DNA Recognition Role of the Carbohydrate Sector in Calicheamicin: A Comparison of DNA Cleaving Capacity of Enantiomeric Calicheamicinones, J. Aiyar, S. A. Hitchcock, D. Denhart, K. K. C. Liu, S. J. Danishefsky, and D. M. Crothers, Angew. Chem . Int. Ed. Engl. 33, 855-858 (1994).
221. A Three-Dimensional Triple-Resonance 1H, 13C, 31P Experiment: Sequential Through-Bond Correlation of Ribose Protons and Intervening Phosphorous along the RNA Oligonucleotide Backbone, J. P. Marino, H. Schwalbe, C. Anklin, W. Bermel, D. M. Crothers, and C. Griesinger, J. Am. Chem. Soc. 116, 6472 - 6473 (1994).
220. DNA Bending in Transcription Initiation, J. D. Kahn and D. M. Crothers, Cold Spring Harbor Symposium on Quantitative Biology, LVIII, 115 - 122 (1993).
219. DNA Bends and Bendability, D. M. Crothers, The Robert A. Welch Foundation 37th Conference on Chemical Research. 40 Years of the Double Helix (1993).
218. Kinetics of an RNA Conformational Switch, K. A. LeCuyer and D. M. Crothers, Proc. Natl. Acad. Sci. USA 91, 3373-3377 (1994).
217. Correlation of Adenine H2/H8 Resonances in Uniformly Labeled RNAs by 2D HCCH-TOCSY: A New tool for 1H Assignment, J. P. Marino, J. H. Prestegard and D. M. Crothers, J. Am. Chem. Soc. 116, 2205-2206 (1994).
216. Detection of Localized DNA Flexibility, J. D. Kahn, E. Yun and D. M. Crothers, Nature 368, 163-166 (1994).
215. Binding Affinity and Site Selectivity of Daunomycin Analogues, C. J. Roche, D. Berkowitz, G. A. Sulikowski, S. J. Danishefsky and D. M. Crothers, Biochemistry 33, 936-942 (1994).
214. Site selectivity of Daunomycin, C. J. Roche, J. A. Thomson and D. M. Crothers, Biochemistry 33, 926-935 (1994).
212. RNA Targeting by the HIV-1 Tat Protein, K.M. Weeks and D.M. Crothers, Perspectives in Drug Discovery and Design 1, 225-234 (1993).
211. Major Groove Accessibility of RNA, K.M. Weeks and D.M. Crothers, Science 261, 1574-1577 (1993).
210. The Leptomonas collosoma Spliced Leader RNA Can Switch between Two Alternate Structural Forms, K.A. LeCuyer and D.M. Crothers, Biochemistry 32, 5301-5311 (1993).
208. Transcriptional Activation by Escherichia coli CAP Protein, D.M. Crothers and T.A. Steitz, in Transcriptional Regulation, S. McKnight and K. Yamamoto, eds., Cold Spring Harbor Laboratory Press (1992).
207. Stability and Properties of Double and Triple Helices: Dramatic Effects of RNA or DNA Backbone Composition, R.W. Roberts and D.M. Crothers, Science 258, 1463-1466 (1992).
206. Structural Modifications of Camptothecin and Effects on Topoisomerase Inhibition, R.T. Crow and D.M. Crothers, J. Med. Chem. 35, 4160-4164 (1992).
205. RNA Binding Assays for the Tat-Derived Peptides: Implications for Specificity, K.M. Weeks and D. M. Crothers, Biochemistry 31, 10281-10287 (1992).
204. Interaction of the Aryl Tetrasaccharide Domain of Calicheamicin gI1 with DNA: Influence of Aglycon and Methidiumproply-EDTA7Iron(II)-Mediated DNA Cleavage, J. Aiyar, S.J. Danishefsky and D.M. Crothers, J. Am. Chem. Soc. 114, 7552-7554 (1992).
203. DNA Bending, Flexibility, and Helical Repeat by Cyclization Kinetics, D. M. Crothers, J. Drak, J. D. Kahn and S. D. Levene, Methods in Enzymology 212B, 3-29 (1992).
202. Global Features of DNA Structures by Comparative Gel Electrophoresis, D. M. Crothers and J. Drak, Methods in Enzymology 212B, 46-71 (1992).
201. Protein-induced Bending and DNA Cyclization, J. D. Kahn and D. M. Crothers, Proc. Natl. Acad. Sci. USA 89, 6343-6347 (1992).
200. Sliding and Intermolecular Transfer of the lac repressor: Kinetic Perturbation of a Reaction Intermediate by a Distant Sequence, T. Ruusala and D. M. Crothers, Proc. Natl. Acad. Sci. USA 89, 4903-4907 (1992).
198. Specificity and Stringency in DNA Triplex Formation, R. W. Roberts and D. M. Crothers, Proc. Natl. Acad. Sci. USA 88, 9397-9401 (1991).
197. The Carbohydrate Domain of Calicheamicin g1I Determines its Sequence Specificity for DNA Cleavage, J. Drak, N. Iwasawa, S. Danishefsky and D. M. Crothers, Proc. Natl. Acad. Sci. USA 88, 7464-7468.
196. RNA Recognition by Tat-Derived Peptides: Interaction in the Major Groove?, K. M. Weeks and D. M. Crothers, Cell 66, 577-588 (1991).
195. Synthetic DNA Bending Sequences Increase the Rate of in Vitro Transcription Initiation at the Escherichia coli lac Promoter, M. R. Gartenberg and D. M. Crothers, J. Mol. Biol. 219, 217-230 (1991).
194. Catabolite Activator Protein-Induced DNA Bending in Transcription Initiation, S. S. Zinkel and D. M. Crothers, J. Mol.Biol. 219, 201-205 (1991).
193. Helical Repeat and Chirality Effects on DNA Gel Electrophoretic Mobility, J. Drak and D. M. Crothers, Proc. Natl. Acad. Sci., USA 88, 3074-3078 (1991).
192. Rapid High-Performance Liquid Chromatography of Nucleic Acids with Polystyrene-based Micropellicular Anion Exchangers, Y. F. Maa, S. C. Lin, C. Horvath, U. C. Yang and D. M. Crothers, J. Chromatogr. 508, 61-73 (1990).
191. Sequence-dependent Contribution of Distal Binding Domains to CAP Protein-DNA Binding Affinity, D. D. Dalma-Weiszhausz, M. R. Gartenberg and D. M. Crothers, Nucl. Acid Res. 19, 611-616 (1991).
189. Fragments of the HIV-1 Tat Protein Specifically Bind TAR RNA, K. M. Weeks, C. Ampe, S. C. Schultz, T. A. Steitz and D. M. Crothers, Science 249, 1281-1285 (1990).
188. Molecular Characterization of the GCN4-DNA Complex, M. R. Gartenberg, C. Ampe, T. A. Steitz and D. M. Crothers, Proc. Natl. Acad. Sci., USA 87, 6034-6038 (1990).
187. Monte-Carlo Simulation of Multisite Echinomycin-DNA Interactions Detected by in Vitro Transcription Analysis, D. R. Phillips, R. J. White, D. Dean and D. M. Crothers, Biochemistry 29, 4812-4819 (1990).
186. N-methylmitomycin A Cross-Linking to Nucleosomal Structure, C. Cera, M. Palumbo, G. Palu and D. M. Crothers, Anti-Cancer Drug Design 5, 55-58 (1990).
185. Determination of the Extent of DNA Bending by an Adenine-Thymine Tract, H.-S. Koo, J. Drak, J. A. Rice and D. M. Crothers, Biochemistry 29, 4227-4234 (1990).
184. Intrinsically Bent DNA, D. M. Crothers, T. E. Haran and J. G. Nadeau, J. Biol. Chem. 265, 7093-7096 (1990).
183. New Insight into Drug-DNA Interactions at Individual Drug Binding Sites Probed by RNA Polymerase During Active Transcription of the DNA, D. R. Phillips, R. J. White, H. Trist, C. Cullinane, D. Dean and D. M. Crothers, Anti-Cancer Drug Design 5, 21-2 9 (1990).
182. Comparative Gel Electrophoresis Measurement of the DNA Bend Angle Induced by the Catabolite Activator Protein, S. S. Zinkel and D. M. Crothers, Biopolymers 29, 29-38 (1990).
180. Modulation of the Stability of a Gene-regulatory Protein Dimer by DNA and cAMP, A. M. Brown and D. M. Crothers, Proc. Natl. Acad. Sci., USA 86, 7387-7391 (1989).
179. Conformation of a Bulge-Containing Oligomer from a Hot-spot Sequence by NMR and Energy Minimization, S. A. Woodson and D. M. Crothers, Biopolymers 28, 1149-1177 (1989).
178. DNA Cross-Linking by Intermediates in the Mitomycin Activation Cascade, C. Cera, M. Egbertson, S. P. Teng, D. M. Crothers and S. J. Danishefsky, Biochemistry 28, 5665-5669 (1989).
177. DNA Bending by the Bulge Defect, J. A. Rice and D. M. Crothers, Biochemistry 28, 4512-4516 (1989).
176. Structural Basis for DNA Bending, J. G. Nadeau and D. M. Crothers, Proc. Natl. Acad. Sci., USA 86, 2622-2626 (1989).
175. Modulation of Mitomycin Cross-Linking by DNA Bending in the Escherichia coli CAP Protein-DNA Complex, C. Cera and D. M. Crothers, Biochemistry 28, 3908-3911 (1989).
174. DNA Sequence Specificity of Mitomycin Cross-Linking, S. P. Teng, S. A. Woodson and D. M. Crothers, Biochemistry 28, 3901-3907 (1989).
173. Nucleic Acid Hybridization: A Rapid Method for the Diagnosis of Infectious Diseases, N. Dattagupta, E. Huguenel, P. Rae and D. Crothers, Perspectives in Antiinefective Therapy, Proceedings of an International Symposium held in Washington, D.C., Au gust 31-September 3, 1988.
172. Synergy Between Escherichia coli CAP Protein and RNA Polymerase in the lac Promoter Open Complex, D. C. Straney, S. B. Straney and D. M. Crothers, J. Mol. Biol. 206, 41-57 (1989).
171. Cooperativity in A-Tract Structure and Bending Properties of Composite TnAn Blocks, T. E. Haran and D. M. Crothers, Biochemistry 28, 2763-2767.
169. Phased Psoralen Crosslinks Do Not Bend the DNA Double Helix, T. E. Haran and D. M. Crothers, Biochemistry 27, 6967-6971 (1988).
168. DNA Sequence Determinants of CAP-Induced Bending and Protein Binding Affinity, M. R. Gartenberg and D. M. Crothers, Nature 333, 824-829 (1988).
167. The Major Adduct of the Antitumor Drug Cis-diamminedichloroplatinum(II) bends the duplex by ~40o toward the Major Groove, J. A. Rice, D. M. Crothers, A. L. Pinto and S. J. Lippard, Proc. Natl. Acad. Sci., USA 85, 4158-4161 (1988).
166. Structural Model for an Oligonucleotide Containing a Bulged Guanosine by NMR and Energy Minimization, S. A. Woodson and D. M. Crothers, Biochemistry 27, 3130-3141 (1988).
165. Calibration of DNA Curvature and a Unified Description of Sequence-Directed DNA Bending, H.-S. Koo and D. M. Crothers, Proc. Natl. Acad. Sci., USA 85, 1763-1767 (1988).
164. Preferential Location of Bulged Guanosine Internal to a G7C Tract by 1H NMR, S. A. Woodson and D. M. Crothers, Biochemistry 27, 436-445 (1988).
162. DNA Bend Direction by Phase Sensitive Detection, S. S. Zinkel and D. M. Crothers, Nature 328, 178-181 (1987).
161. Kinetics of the Stages of Transcription Initiation at the Escherichia coli lac UV5 Promoter, S. B. Straney and D. M. Crothers, Biochemistry 26, 5063-5070 (1987).
160. Effects of Antitumor Drugs on Transcription, D. M. Crothers, D. C. Straney and D. R. Phillips in "Molecular Mechanisms of Carcinogenic and Antitumor Activity", C. Chagas and B. Pullman, eds, Pontificiae Academiae Scientiarum Scripta Varia 70, 403-42 4 (1987).
159. Chemical Determinants of DNA Bending at Adenine-Thymine Tracts, H.-S. Koo and D. M. Crothers, Biochemistry 26, 3745-3748 (1987).
158. Effect of Drug-DNA Interactions upon Transcription Initiation at the lac Promoter, D. C. Straney and D. M. Crothers, Biochemistry 26, 1987-1995 (1987).
157. Anthracycline Antibiotics. Interaction with DNA and Nucleosomes and Inhibition of DNA Synthesis, H. Fritzsche, U. Wahnert, J. B. Chaires, N. Dattagupta, F. B. Schlessinger and D. M. Crothers, Biochemistry 26, 1996-2000 (1987).
156. Comparison of the Open Complexes Formed by RNA Polymerase at the E. coli lac UV5 Promoter, D. C. Straney and D. M. Crothers, J. Mol. Biol. 193, 279-292 (1987).
155. A Stressed Intermediate in the Formation of Stably Initiated RNA Chains at the E. coli lac UV5 Promoter, D. C. Straney and D. M. Crothers, J. Mol. Biol. 193, 267-278 (1987).
154. Gel electrophoresis of Protein-DNA Complexes, D. M. Crothers, Nature 325, 464-465 (1987).
153. Proton Nuclear Magnetic Resonance Studies on Bulge-Containing DNA Oligonucleotides from a Mutational Hot-Spot Sequence, S. A. Woodson and D. M. Crothers, Biochemistry 26, 904-912 (1987).
151. The DNA Binding Domain and Bending Angle of E. Coli CAP Protein, H.-N. Liu-Johnson, M. R. Gartenberg and D. M. Crothers, Cell 47, 995-1005 (1986).
150. Kinetics and Sequence Specificity of Drug-DNA Interactions: An in vitro Transcription Assay, D. R. Phillips and D. M. Crothers, Biochemistry 25, 7355-7362 (1986).
149. Bending and Flexibility of Kinetoplast DNA, S. D. Levene, H.-M. Wu and D. M. Crothers, Biochemistry 25, 3988-3995 (1986).
148. Higher Order Structure of Chromatin: Evidence from Photochemically Detected Linear Dichroism, D. Sen, S. Mitra and D. M. Crothers, Biochemistry 25, 3441-3447 (1986).
147. Topological Distributions and the Torsional Rigidity of DNA: A Monte Carlo Study of DNA Circles, S. D. Levene and D. M. Crothers, J. Mol. Biol. 189, 73-83 (1986).
146. Ring Closure Probabilities for DNA Fragments by Monte Carlo Simulation, S. D. Levene and D. M. Crothers, J. Mol. Biol. 189, 61-72 (1986).
145. DNA Bending at Adenine.Thymine Tracts, H.-S. Koo, H.-M. Wu and D. M. Crothers, Nature 320, 501-506 (1986).
144. Influence of DNA-Binding Drugs on Chromatin Condensation, D. Sen and D. M. Crothers, Biochemistry 25, 1503-1509 (1986).
143. Condensation of Chromatin: Role of Multivalent Cations, D. Sen and D. M. Crothers, Biochemistry 25, 1495-1503 (1986).
141. Intermediates in Transcription Initiation from the E. coli lac UV5 Promoter, D. C. Straney and D. M. Crothers, Cell 43, 449-459 (1985).
140. Effects of DNA-Binding Drugs on Transcription, D. M. Crothers, D. R. Phillips and D. Straney, Studia Biophysica 104, 21-24 (1985).
139. Kinetics of the Daunomycin-DNA Interaction, J. B. Chaires, N. Dattagupta and D. M. Crothers, Biochemistry 24, 260-267 (1985).
137. The Locus of Sequence-Directed and Protein-Induced DNA Bending, H.-M. Wu and D. M. Crothers, Nature 308, 509-513 (1984).
136. Orientation of Nucleosomes and Linker DNA in Calf Thymus Chromatin Determined by Photochemical Dichroism, S. Mitra, D. Sen and D. M. Crothers, Nature 308, 247-250 (1984).
135. Kinetics and Mechanism in the Reaction of Gene Regulatory Proteins with DNA, M. G. Fried and D. M. Crothers, J. Mol. Biol. 172, 263-282 (1984).
134. Equilibrium Studies of the cAMP Receptor Protein-DNA Interaction, M. G. Fried and D. M. Crothers, J. Mol. Biol. 172, 241-262 (1984).
132. DNA Bending and Protein-DNA Interactions, D. M. Crothers, S. D. Levene and H.-M. Wu, in "Nucleic Acids: The Vectors of Life," eds. B. Pullman and J. Jortner, Jerusalem Symp. Quant. Chem. and Biochem. 16, 277-282 (1983).
131. A Computer Graphics Study of Sequence-Directed Bending in DNA, S. D. Levene and D. M. Crothers, J. Biomolec. Structure and Dynamics 1, 429-436 (1983).
130. High Resolution NMR Studies of A- and G-Containing Oligonucleotides. B. W.-K. Shum and D. M. Crothers, Biopolymers 22, 919-933 (1983).
129. A Bent Helix in Kinetoplast DNA. J. C. Marini, S. D. Levene, D. M. Crothers and P. T. Englund, Cold Spring Harbor Symp. Quant. Biol. 47, 279-283 (1983).
128. Transmission of Long-range Effects in DNA. D. M. Crothers and M. Fried, Cold Spring Harbor Symp. Quant. Biol. 47, 263-269 (1983).
127. CAP Binding to B and Z Forms of DNA. M. G. Fried, H.-M. Wu and D. M. Crothers, Nuc. Acids Res. 11, 2479-2494 (1983).
126. Binding of Daunomycin to Calf Thymus Nucleosomes. J. B. Chaires, N. Dattagupta and D. M. Crothers, Biochemistry 22, 284-292 (1983).
125. CAP and RNA Polymerase Interactions with the lac Promoter: Binding Stoichiometry and Long Range Effects. M. G. Fried & D. M. Crothers, Nuc. Acids Res. 11, 141-157 (1983).
123. Bent Helical Structure in Kinetoplast DNA. J. C. Marini, S. D. Levene, D. M. Crothers and P. T. Englund, Proc. Nat. Acad. Sci., U.S.A. 79, 7664-7668 (1982).
122. Orientation of Nucleosomes in the Thirty-Nanometer Chromatin Fiber. H. Yabuki, N. Dattagupta and D. M. Crothers, Biochemistry 21, 5015-5020 (1982).
121. Studies on Interaction of Anthracycline Antibiotics and Deoxyribonucleic Acid: Geometry of Intercalation of Iremycin and Daunomycin, H. Fritzsche, H. Triebel, J. B. Chaires, N. Dattagupta and D. M. Crothers, Biochemistry 21, 3940-3946 (1982).
120. Studies on Interaction of Anthracycline Antibiotics and Deoxyribonucleic Acid: Equilibrium Binding Studies on Interaction of Daunomycin with Deoxyribonucleic Acid, J. B. Chaires, N. Dattagupta and D. M. Crothers, Biochemistry 21, 3933-3940 (1982).
119. Self-Association of Daunomycin, J. B. Chaires, N. Dattagupta and D. M. Crothers, Biochemistry 21, 3927-3932 (1982).
118. Unfolding of 175 bp Nucleosomes, F. B. Schlessinger, N. Dattagupta and D. M. Crothers, Biochemistry 21, 664-669 (1982).
117. Influence of Ionic Strength on the Dichroism Properties of Polynucleosomal Fibers. K. S. Lee and D. M. Crothers, Biopolymers 21, 110-116 (1982).
115. Solution Structural Studies of the A and Z Forms of DNA. H.-M. Wu, N. Dattagupta and D. M. Crothers, Proc. Nat. Acad. Sci., U.S.A. 78, 6808-6811 (1981).
114. The Dimensions of DNA in Solution. M. Mandelkern, J. G. Elias, D. Eden and D. M. Crothers, J. Mol. Biol. 152, 153-161 (1981).
113. Conversion of B DNA Between Solution and Fiber Conformations. M. Mandelkern, N. Dattagupta and D. M. Crothers, Proc. Nat. Acad. Sci., U.S.A. 78, 4294-4298 (1981).
112. Solution Structural Studies of the Ag(I)-DNA Complex. N. Dattagupta and D. M. Crothers, Nuc. Acids Res. 9, 2971-2985 (1981).
111. Equilibrium Studies of Ethidium-Polynucleotide Interactions. J. L. Bres1off and D. M. Crothers, Biochemistry 20, 3547-3553 (1981).
110. Solution Structural Studies of Chromatin Fibers. K. S. Lee, M. Mandelkern, and D. M. Crothers, Biochemistry 20, 1438-1445 (1981).
108. A proton-coupled conformational switch of Escherichia coli 5S ribosomal RNA, T. H. Kao and D. M. Crothers, Proc. Natl. Acad. Sci., U.S.A. 77, 3360-3364 (1980).
107. Effect of DNA Length on the Nucleosome Low Salt Transition, A. E. Dieterich, H. Eshaghpour, D. M. Crothers and C. R. Cantor, Nuc. Acids Res. 8, 2475-2487 (1980).
106. Singlet-Singlet Energy Transfer Studies of the Internal Organization of Nucleosomes, H. Eshaghpour, A. E. Dieterich, C. R. Cantor and D. M. Crothers, Biochemistry 19, 1797-1805 (1980).
105. Unfolding of Nucleosomes by Ethidium Binding, H.-M. Wu, N. Dattagupta, M. Hogan and D. M. Crothers, Biochemistry 19, 626-634 (1980).
103. Selective Repression of Transcription by Base Sequence Specific Synthetic Polymers, L. D. Kosturko, N. Dattagupta and D. M. Crothers, Biochemistry 18, 5751-5756 (1979).
102. The 3' Terminus of 16S RNA: Secondary Structure and Interaction with Ribosomal Protein S1, R. C. Yuan, J. A. Steitz, P. B. Moore and D. M. Crothers, Nuc. Acids Res. 7, 2399-2418 (1979.)
101. DNA Structure and its Distortion by Drugs, D. M. Crothers, N. Dattagupta and M. Hogan, in "Stereodynamics of Molecular Systems" 383-396, R. H. Sarma, ed., Pergamon Press, New York (1979).
100. Specific Chemical Labeling of DNA Fragments, H. Eshaghpour, D. Soll and D. M. Crothers, Nuc. Acids Res. 7, 1485-1495 (1979).
99. Analysis of RNA Secondary Structure by Photochemical Reversal of Psoralen Crosslinks, D. Rabin and D. M. Crothers, Nuc. Acids Res. 7, 689-703 (1979).
98. NMR Investigation of Lysine-Oligopeptides and a Complex with d(pA)3pGpC(pT)3, P. Davanloo and D. M. Crothers, Biopolymers 18, 2213-2231 (1979).
97. Structural Changes of Nucleosomes in Low Salt Concentrations, H.-M. Wu, N. Dattagupta, M. Hogan and D. M. Crothers, Biochemistry 18, 3960-3965 (1979).
96. Physical Chemistry with Applications to the Life Sciences, D. Eisenberg and D. M. Crothers, Benjamin/Cummings, Inc., Menlo Park, Calif. (1979).
95. 31P NMR Studies of the Solution Structure and Dynamics of Nucleosomes and DNA, L. Klevan, I. M. Armitage and D. M.Crothers, Nuc. Acids Res. 6, 1607-1616 (1979).
94. High-Resolution NMR of Exchangeable Protons in Arginine, Oligoarginine, and the Arginine-Rich Histone Tetramer, L. Klevan and D. M. Crothers, Biopolymers 18, 1029-1044 (1979).
93. Transmission of Allosteric Effects in DNA, M. Hogan, N. Dattagupta and D. M. Crothers, Nature 278, 521-524 (1979).
92. 31P NMR Spin-Lattice Relaxation Studies of Deoxyoligonucleotides, P. Davanloo, I. M. Armitage and D. M. Crothers, Biopolymers 18, 663-680 (1979).
91. Transient Electric Dichroism Studies of the Structure of the DNA Complex with Intercalated Drugs, M. Hogan, N. Dattagupta and D. M. Crothers, Biochemistry 18, 280-288 (1979).
90. Conformational Changes of tRNA, D. M. Crothers and P. E. Cole, in Transfer RNA, ed. S. Altman, MIT Press, Cambridge, Mass., 196-247 (1978).
89. Physical Studies of Nuclesome Assembly, L. Klevan, N. Dattagupta, M. Hogan and D. M. Crothers, Biochemistry 17, 4533-4540 (1978).
88. Transient Electric Dichroism Studies of Nucleosomal Particles, D. M. Crothers, N. Dattagupta, M. Hogan, L. Klevan and K. S. Lee, Biochemistry 17, 4525-4533 (1978).
87. Does Irehdiamine Kink DNA?, N. Dattagupta, M. Hogan and D. M. Crothers, Proc. Natl. Acad. Sci., USA 75, 4286-4290 (1978).
86. Simplified Methods for Large Scale Enzymatic Synthesis of Oligoribonucleotides, B. Shum and D. M. Crothers, Nuc. Acids Res. 5, 2297-2311 (1978).
85. Electric Dichroism Studies of the Size and Shape of Nucleosomal Particles, L. Klevan, M. Hogan, N. Dattagupta and D. M. Crothers, Cold Spring Harbor Symp. Quant. Biol. 42, 207-214 (1978).
84. On the physical Basis for Ambiguity in Genetic Coding Interactions, H. J. Grosjean, S. de Henau and D. M. Crothers, Proc. Natl. Acad. Sci., USA 75, 610 (1978).
83. Transient Electric Dichroism of Rod-Like DNA Molecules, M. Hogan, N. Dattagupta and D. M. Crothers, Proc. Natl. Acad. Sci., USA 75, 195-199 (1978).
82. Preparative Separation of the Complementaty Strands of DNA Restriction Fragments by Alkaline RPC-5 Chromatography, H. Eshaghpour and D. M. Crothers, Nuc. Acids Res. 5, 13-21 (1978).
81. Isolation and Characterization of a Spacerless Dinucleosome from H1-Depleted Chromatin, L. Klevan and D. M. Crothers, Nuc. Acids Res. 4, 4077-4089 (1977).
80. Pathway-Dependent Refolding of E. Coli 5S rRNA, H. Weidner and D. M. Crothers, Nuc. Acids Res. 4, 3401-3414 (1977).
79. Studies of the Complex between tRNAs with Complementary Anticodons: A Direct Approach to the "Wobble" Problem, H. Grosjean, D. Soll and D. M. Crothers, Arch. Int. de Physiol. et de Biochimie 85, 414 (1977).
78. Influence of the A15 Mutation on the Conformational Energy Balance in E. coli tRNATyr, V. Leon, S. Altman and D. M. Crothers, J.Mol. Biol. 113, 253-265 (1977).
77. An Ethidium-Induced Double Helix of poly(dA)7poly(rU), E. A. Lehrman and D. M. Crothers, Nuc. Acids Res. 4, 1381-1393 (1977).
76. Does 5S RNA Function by a Switch between Two Secondary Structures?, H. Weidner, R. Yuan and D. M. Crothers, Nature 266, 193-194 (1977.)
75. Kinetic Studies of Drug-Dinucleotide Complexes, P. Davanloo and D. M. Crothers, Biochemistry 15, 5299-5304 (1976).
74. Physical Characterization of a Ribosomal Nucleoprotein Complex, T. R. Tritton and D. M. Crothers, Biochemistry 15, 4377-4385 (1976).
73. Phase Partition Studies of Actinomycin - Nucleotide Complexes, P. Davanloo and D. M. Crothers, Biochemistry 15, 4433-4438 (1976).
72. Physical Studies of Denatured tRNA2Glu, M. Bina-Stein, D. M. Crothers and R. G. Shulman, Proc. Natl. Acad. Sci., USA 73, 2216-2220 (1976).
71. Studies of the Complex between transfer RNAs with Complementary Anticodons: Origins of Enhanced Affinity between Complementary Triplets, H. Grosjean, D. Soll and D. M. Crothers, Arch. Int. de Physiol. et de Biochimie 84, 163-164 (1976).
70. Studies of the Complex between Transfer RNAs with Complementary Anticodons. I. Origins of Enhanced Affinity between Complementary Triplets, H. Grosjean, D. G. Soll and D. M. Crothers, J. Mol. Biol. 103, 499-519 (1976).
69. Studies of the Complex between Transfer RNA Molecules and Complementary Anticodons: Kinetic and Thermodynamic Aspects, H. Grosjean, D. Soll and D. M. Crothers, Arch. Int. de Physiol. et de Biochimie 83, 970-971 (1975).
68. Conformational Changes of tRNA. The role of Mg(II), A. Stein and D. M. Crothers, Biochemistry 15, 160-168 (1976).
67. Equilibrium Binding of Mg(II) by E. coli tRNAfMet, A. Stein and D. M. Crothers, Biochemistry 15, 157-160 (1976).
66. RNA Structure and Structural Changes, D. M. Crothers, in "Structure and Conformation of Nucleic Acids and Protein-Nucleic Acid Interactions" 215-221, ed. M. Sundaralingam and S. T. Rao, University Park Press, Baltimore, Maryland (1975).
65. Localization of the Structural Change Induced in tRNAfMet Escherichia coli by Acidic pH, M. Bina-Stein and D. M. Crothers, Biochemistry 14, 4185 (1975).
64. Ethidium Reaction Kinetics: Demonstration of Direct Ligand Transfer between DNA Binding Sites, J. L. Bresloff and D. M. Crothers, J. Mol. Biol. 95, 103-123 (1975).
63. Binding Kinetics of Mercury (II) to Polynucleotides, M. N. Williams and D. M. Crothers, Biochemistry 14, 1944-1951 (1975).
62. The Influence of Heteroatoms and Polarizability on the Base Specificity of Intercalating Ligands, W. Muller and D. M. Crothers, Eur. J. Biochem. 54, 267-277 (1975).
61. Functional Linkage in Biomolecular Systems, D. M. Schneider, D. M. Crothers and F. O. Schmitt eds., Raven Press, New York (1975).
60. The Molecular Mechanism of Thermal Unfolding of Transfer RNA, D. M. Crothers, P. E. Cole, C. W. Hilbers and R. G. Shulman, J. Mol. Biol. 87, 63-88 (1974).
59. Conformational Changes of Transfer Ribonucleic Acid. The pH Phase Diagram under Acidic Conditions, M. Bina-Stein and D. M. Crothers, Biochemistry 13, 2771 (1974).
58. Direct Physical Evidence for Secondary Structure in an Isolated Fragment of R17 Bacteriophage mRNA, J. Gralla, J. A. Steitz and D. M. Crothers, Nature 248, 204-208 (1974).
57. Origins of Base Specificity in Actinomycin and Other DNA Ligands, D. M. Crothers and W. Muller, Cancer Chemother. Rep. 58, 97-100 (1974).
56. Thermodynamic and Kinetic Properties of Short RNA Helices: The Oligomer Sequence AnGCUn, J. Ravetch, J. Gralla and D. M. Crothers, Nuc. Acids Res. 1, 109 (1974).
55. Improved Estimation of Secondary Structure in Ribonucleic Acids, I. Tinoco, Jr., P. N. Borer, B. Dengler, M. D. Levine, O. C. Uhlenbeck, D. M. Crothers and J. Gralla, Nature New Biology 246, 40-41 (1973).
54. A Non-Intercalating Proflavine Derivative, W. Muller, D. M. Crothers and M. J. Waring, Eur. J. Biochem. 39, 223 (1973).
53. Nuclear Magnetic Resonance Study of Hydrogen-Bonded Ring Protons in Watson-Crick Base Pairs, D. M. Crothers, C. W. Hilbers and R. G. Shulman, Proc. Natl. Acad. Sci., USA 70, 2899 (1973).
52. The Contribution of Proximity and Orientation to Catalytic Reaction Rates, C. DeLisi and D. M. Crothers, Biopolymers 12, 1689-1704 (1973).
51. Free Energy of Imperfect Nucleic Acid Helices. III. Small Internal Loops Resulting from Mismatches, J. Gralla and D. M. Crothers, J. Mol. Biol. 78, 301 (1973).
50. Free Energy of Imperfect Nucleic Acid Helices. II. Small Hairpin Loops, J. Gralla and D. M. Crothers, J. Mol. Biol. 73, 497 (1973).
49. Conformational Changes of Transfer Ribonucleic Acid. Comparison of the Early Melting Transition of Two Tyrosine-Specific Transfer Ribonucleic Acids, S. K. Yang and D. M. Crothers, Biochemistry 11, 4375 (1972).
48. Conformational Changes of Transfer Ribonucleic Acid. Relaxation Kinetics of the Early Melting Transition of Methionine Transfer Ribonucleic Acid (Escherichia coli), P. E. Cole and D. M. Crothers, Biochemistry 11, 4368 (1972).
47. Conformational Changes of Transfer Ribonucleic Acid. Equilibrium Phase Diagrams, P. E. Cole, S. K. Yang and D. M. Crothers, Biochemistry 11, 4358 (1972).
46. Is There a Discriminator Site in Transfer RNA?, D. M. Crothers, T. Seno and D. G. Soll, Proc. Natl. Acad. Sci., USA 69, 3063 (1972).
45. Properties of a Dimer of tRNAITyr (Escherichia coli), S. K. Yang, D. G. Soll and D. M. Crothers, Biochemistry 11, 2311 (1972).
44. Free Energy of Imperfect Nucleic Acid Helices. I. The Bulge Defect, T. R. Fink and D. M. Crothers, J. Mol. Biol. 66, 1 (1972).
43. The Influence of Polyvalency on the Binding Properties of Antibodies, D. M. Crothers and H. Metzger, Immunochemistry 9, 341 (1972).
42. Local Effects of Partial Adenine-N1-Oxidation on Poly A7Poly U and Poly A72 Poly U Helix Conformations, T. R. Fink and D. M. Crothers, Biopolymers 11, 127 (1972).
41. Relaxation Kinetics of Dimer Formation by Self Complementary Oligonucleotides, M. E. Craig, D. M. Crothers and P. Doty, J. Mol Biol. 62, 383 (1971).
40. Rate of Unwinding Small DNA, R. J. Cohen and D. M. Crothers, J. Mol. Biol. 61, 525 (1971).
39. Electrostatic Contributions to Oligonucleotide Transitions, C. DeLisi and D. M. Crothers, Biopolymers 10, 2323 (1971).
38. Statistical Thermodynamics of Nucleic Acid Melting Transitions with Coupled Binding Equilibria, D. M. Crothers, Biopolymers 10, 2147 (1971).
37. Prediction of RNA Secondary Structure, C. DeLisi and D. M. Crothers, Proc. Natl. Acad. Sci., USA 68, 2682 (1971).
36. A Proton Magnetic Resonance Study of Single-Stranded and Double-Helical Deoxyribooligonucleotides, A. D. Cross and D. M. Crothers, Biochemistry 10, 4015 (1971).
35. Theory of Friction-Limited DNA Unwinding, D. M. Crothers and H. C. Spatz, Biopolymers 10, 1949 (1971).
34. Sterische und Elektronische Effekte bei der Bindung von Acridinen und Ahnlichen Ringsystemen an DNS, W. Muller and D. M. Crothers, Studia Biophysica 24/25, 279 (1970).
33. Kinetics of Complex Formation by Nucleic Acids, D. M. Crothers, Studia Biophysica 24/25, 79 (1970).
32. Kinetics of Binding Drugs to DNA, D. M. Crothers, Progress in Molecular and Subcellular Biology 2, 10 (1971).
31. The Physical Chemistry of Nucleic Acids, V. Bloomfield, D. M. Crothers and I. Tinoco, Jr., Harper and Row (1974).
30. Theory of the Influence of Oligonucleotide Chain Conformation on Double Helix Stability, C. DeLisi and D. M. Crothers, Biopolymers 10, 1809 (1971).
29. Temperature Jump Methods, D. M. Crothers, in "Procedures in Nucleic Acid Research", ed. Cantoni and Davies, Harper and Row (1971).
28. Kinetic and Hydrodynamic Studies of the Complex of Proflavine with Poly A.Poly U, D. E. V. Schmechel and D. M. Crothers, Biopolymers 10, 465 (1971).
27. Preparation and Characterization of Monodisperse, Crosslinked Low Molecular Weight DNA, R. J. Cohen and D. M. Crothers, Biochemistry 9, 2533 (1970).
26. Studies of the Optical Properties of the Proflavine-DNA Complex, H. J. Li and D. M. Crothers, Biopolymers 8, 217 (1969).
25. The Preparation, Preservation, and Properties of High Molecular Weight Polyadenylic Acid, D. W. Hennage, D. M. Crothers and D. B. Ludlum, Biochemistry 8, 2298 (1969).
24. On the Mechanism of Deoxyribonucleic Acid Unwinding, D. M. Crothers, Acts. Chem. Res. 2, 225 (1969).
23. The Rate of DNA Unwinding, H.-CH. Spatz and D. M. Crothers, J. Mol. Biol. 42, 191 (1969).
22. Computation of Molecular Weight Averages for DNA Molecules Containing Both Preformed and Randomly Induced Single-Strand Breaks, D. M. Crothers, H.-CH. Spatz and E. Elson, Biopolymers 7, 215 (1969).
21. Relaxation Studies of the Proflavine-DNA Complex: The Kinetics of an Intercalation Reaction, H. J. Li and D. M. Crothers, J. Mol. Biol. 39, 461 (1969).
20. Appendix: Steady-State Kinetics of Double Helix Formation, D. M. Crothers, N. Davidson and N. R. Kallenbach, J. Am. Chem. Soc. 90, 3560 (1968).
19. Calculation of Melting Curves for DNA, D. M. Crothers, Biopolymers 6, 1391 (1968).
18. Studies of the Binding of Actinomycin and Related Compounds to DNA, W. Muller and D. M. Crothers, J. Mol. Biol. 35, 251 (1968).
17. Comparison of Several Calculations of Helix-Coil Transitions in Heterogeneous Polymers, T. R. Fink and D. M. Crothers, Biopolymers 6, 863 (1968).
16. Calculation of Binding Isotherms for Heterogeneous Polymers, D. M. Crothers, Biopolymers 6, 575 (1968).
15. Thermodynamic Studies of a Model System for Hydrophobic Bonding, D. M. Crothers and D. I. Ratner, Biochemistry 7, 1823 (1968).
14. Studies Concerning the Behavior of Actinomycin in Solution, D. M. Crothers, S. L. Sabol, D. I. Ratner and W. Muller, Biochemistry 7, 1817 (1968).
13. Calculation of Kinetic Curves for the Helix-Coil Transition of Polypeptides, Mary E. Craig and D. M. Crothers, Biopolymers 6, 385 (1968).
12. Structure and Structural Transformations of Nucleic Acids, D. M. Crothers, in "The Neurosciences" 67, Rockefeller University Press, New York (1967).
11. On the Form of the Partition Function for the Helix-Coil Transition of Heterogeneous Polymers, Biopolymers 4, 1025 (1966).
10. Theory of Thermal Transitions in Cohered DNA from Phage Lamda, N. R. Kallenbach and D. M. Crothers, Proc. Natl. Acad. Sci., USA 56, 1018 (1966).
9. On the Helix-Coil Transition in Heterogeneous Polymers, D. M. Crothers and N. R. Kallenbach, J. Chem. Phys. 45, 917 (1966).
8. Zur Kinetik der DNS-Denaturierung, D. M. Crothers, Ber. Bunsenges. Physik. Chem. 68, 840 (1964).
7. The Melting Transition of Low Molecular Weight DNA: Theory and Experiment, D. M. Crothers, N. R. Kallenbach and B. H. Zimm, J. Mol. Biol. 11, 802 (1965).
6. Viscosity and Sedimentation of the DNA from Bacteriophages T2 and T7 and the Relation to Molecular Weight, D. M. Crothers and B. H. Zimm, J. Mol. Biol. 12, 525 (1965).
5. The Kinetics of DNA Denaturation, D. M. Crothers, J. Mol. Biol. 9, 712 (1964).
4. Theory of the Melting Transition of Synthetic Polynucleotides: Evaluation of the Stacking Free Energy, D. M. Crothers and B. H. Zimm, J. Mol. Biol. 9, 1 (1964).
3. Interpretation of the Kinetics of Helix Formation, N. R. Kallenbach, D. M. Crothers and R. G. Mortimer, Biochem. Biophys. Res. Comm. 11, 213 (1963).
2. A Phage Infecting Saprospira Grandis, R. A. Lewin, D. M. Crothers, D. L. Correll and B. F. Reimann, Canadian J. of Microbiology 10, 75 (1964).
1. Simplified Rotating Cylinder Viscometer for DNA, B. H. Zimm and D. M. Crothers, Proc. Natl. Acad. Sci., USA 48, 905 (1962).